R Interface to CoreArray Genomic Data Structure (GDS) Files

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Documentation for package ‘gdsfmt’ version 1.40.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

gdsfmt-package	R Interface to CoreArray Genomic Data Structure (GDS) files
add.gdsn	Add a new GDS node
addfile.gdsn	Add a GDS node with a file
addfolder.gdsn	Add a folder to the GDS node
append.gdsn	Append data to a specified variable
apply.gdsn	Apply functions over margins
assign.gdsn	Assign/append data to a GDS node
cache.gdsn	Caching variable data
cleanup.gds	Clean up fragments
closefn.gds	Close a GDS file
clusterApply.gdsn	Apply functions over matrix margins in parallel
cnt.gdsn	Return the number of child nodes
compression.gdsn	Modify compression mode
copyto.gdsn	Copy GDS nodes
createfn.gds	Create a GDS file
delete.attr.gdsn	Delete attribute(s)
delete.gdsn	Delete a GDS node
diagnosis.gds	Diagnose the GDS file
digest.gdsn	create hash function digests
exist.gdsn	Return whether the path exists or not
gds.class	the class of GDS file
gdsfmt	R Interface to CoreArray Genomic Data Structure (GDS) files
gdsn.class	the class of variable node in the GDS file
get.attr.gdsn	Get attributes
getfile.gdsn	Output a file from a stream container
getfolder.gdsn	Get the folder
index.gdsn	Get the specified node
is.element.gdsn	whether the elements are in a set
is.sparse.gdsn	whether a sparse array or not
lasterr.gds	Return the last error message
ls.gdsn	Return the names of child nodes
moveto.gdsn	Relocate a GDS node
name.gdsn	Return the variable name of a node
objdesp.gdsn	Variable description
openfn.gds	Open a GDS file
permdim.gdsn	Array Transposition
print.gds.class	Show the information of class "gds.class" and "gdsn.class"
print.gdsn.class	Show the information of class "gds.class" and "gdsn.class"
put.attr.gdsn	Add an attribute into a GDS node
read.gdsn	Read data field of a GDS node
readex.gdsn	Read data field of a GDS node with a selection
readmode.gdsn	Switch to read mode in the compression settings
rename.gdsn	Rename a GDS node
setdim.gdsn	Set the dimension of data field
show-method	Show the information of class "gds.class" and "gdsn.class"
showfile.gds	Enumerate opened GDS files
summarize.gdsn	GDS object Summaries
sync.gds	Synchronize a GDS file
system.gds	Get the parameters in the GDS system
unload.gdsn	Unload a GDS node
write.gdsn	Write data to a GDS node