Turn Bioconductor objects into tidy data frames
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Documentation for package ‘biobroom’ version 1.34.0
Help Pages
| biobroom-package | Convert Bioconductor Object into Tidy Data Frames |
| augment.deSet | Tidying methods for edge's deSet object |
| augment.DGEList | Tidiers for edgeR's differential expression objects |
| augment.MArrayLM | Tidiers for the output of limma (linear models for microarray analysis) |
| augment.qvalue | Tidying methods for a qvalue object |
| augment_sva | Tidying methods for a sva list |
| biobroom | Convert Bioconductor Object into Tidy Data Frames |
| DESeq2_tidiers | Tidying methods for DESeq2 DESeqDataSet objects |
| edgeR_tidiers | Tidiers for edgeR's differential expression objects |
| ExpressionSet_tidiers | Tidying methods for Biobase's ExpressionSet objects |
| glance.deSet | Tidying methods for edge's deSet object |
| glance.DGEExact | Tidiers for edgeR's differential expression objects |
| glance.GRanges | Tidying methods for GRanges and GRangesList objects. |
| glance.GRangesList | Tidying methods for GRanges and GRangesList objects. |
| glance.list | Tidiers for return values from functions that aren't S3 objects |
| glance.MArrayLM | Tidiers for the output of limma (linear models for microarray analysis) |
| glance.qvalue | Tidying methods for a qvalue object |
| glance_sva | Tidying methods for a sva list |
| hammer | ExpressionSet results from Hammer et al 2010 |
| limma_tidiers | Tidiers for the output of limma (linear models for microarray analysis) |
| list_tidiers | Tidiers for return values from functions that aren't S3 objects |
| MSnSet_tidiers | Tidying methods for Biobase's ExpressionSet objects |
| qvalue_tidiers | Tidying methods for a qvalue object |
| SummarizedExperiment_tidiers | Tidying methods for Biobase's SummarizedExperiment objects |
| tidy.DESeqDataSet | Tidying methods for DESeq2 DESeqDataSet objects |
| tidy.DESeqResults | Tidying methods for DESeq2 DESeqDataSet objects |
| tidy.deSet | Tidying methods for edge's deSet object |
| tidy.DGEExact | Tidiers for edgeR's differential expression objects |
| tidy.DGEList | Tidiers for edgeR's differential expression objects |
| tidy.EList | Tidiers for the output of limma (linear models for microarray analysis) |
| tidy.ExpressionSet | Tidying methods for Biobase's ExpressionSet objects |
| tidy.GRanges | Tidying methods for GRanges and GRangesList objects. |
| tidy.GRangesList | Tidying methods for GRanges and GRangesList objects. |
| tidy.list | Tidiers for return values from functions that aren't S3 objects |
| tidy.MAList | Tidiers for the output of limma (linear models for microarray analysis) |
| tidy.MArrayLM | Tidiers for the output of limma (linear models for microarray analysis) |
| tidy.MSnSet | Tidying methods for Biobase's ExpressionSet objects |
| tidy.qvalue | Tidying methods for a qvalue object |
| tidy.RangedSummarizedExperiment | Tidying methods for Biobase's SummarizedExperiment objects |
| tidy_sva | Tidying methods for a sva list |