Package: ShortRead
Type: Package
Title: FASTQ input and manipulation
Version: 1.61.0
Authors@R: c(
        person("Bioconductor Package", "Maintainer",  role="cre",
            email="maintainer@bioconductor.org"),
        person("Martin", "Morgan", role = "aut"),
        person("Michael", "Lawrence", role = "ctb"),
        person("Simon", "Anders", role = "ctb")
    )
Description: This package implements sampling, iteration, and input of
        FASTQ files. The package includes functions for filtering and
        trimming reads, and for generating a quality assessment report.
        Data are represented as DNAStringSet-derived objects, and
        easily manipulated for a diversity of purposes.  The package
        also contains legacy support for early single-end, ungapped
        alignment formats.
License: Artistic-2.0
LazyLoad: yes
Depends: BiocGenerics (>= 0.23.3), BiocParallel, Biostrings (>=
        2.47.6), Rsamtools (>= 1.31.2), GenomicAlignments (>= 1.15.6)
Imports: Biobase, S4Vectors (>= 0.17.25), IRanges (>= 2.13.12),
        GenomeInfoDb (>= 1.15.2), GenomicRanges (>= 1.31.8), hwriter,
        methods, zlibbioc, lattice, latticeExtra,
Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
LinkingTo: S4Vectors, IRanges, XVector, Biostrings, Rhtslib, zlibbioc
biocViews: DataImport, Sequencing, QualityControl
URL: https://bioconductor.org/packages/ShortRead,
        https://github.com/Bioconductor/ShortRead,
        https://support.bioconductor.org/tag/ShortRead
BugReports: https://github.com/Bioconductor/ShortRead/issues
Author: Bioconductor Package Maintainer [cre],
  Martin Morgan [aut],
  Michael Lawrence [ctb],
  Simon Anders [ctb]
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Built: R 4.4.0; x86_64-apple-darwin10.8.0; 2024-04-30 20:57:57 UTC; unix
