Locus 1

Sequence ID hg18.chr11
Location 93,103,215 – 93,103,287
Length 72
Max. P 0.819693
window1

overview

Window 1

Location 93,103,215 – 93,103,287
Length 72
Sequences 6
Columns 75
Reading direction reverse
Mean pairwise identity 59.81
Mean single sequence MFE -14.44
Consensus MFE -5.69
Energy contribution -5.92
Covariance contribution 0.22
Combinations/Pair 1.29
Mean z-score -1.70
Structure conservation index 0.39
SVM decision value 0.68
SVM RNA-class probability 0.819693
Prediction RNA

Download alignment: ClustalW | MAF

>hg18.chr11 93103215 72 - 134452384
GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCUUUAGAGGAUC
((....((((((.-......(--(((((((.....))))))))......))))))..))..(((....))).... ( -16.72)
>panTro1.chr9 95004955 72 - 136640551
GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCUUUAGAGGAUC
((....((((((.-......(--(((((((.....))))))))......))))))..))..(((....))).... ( -16.72)
>rheMac2.chr14 92292658 68 - 133002572
GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAU----CUUUUGACUCCAGCUUUUUAGGGGAUC
......((((((.-......(--(((((((.....)))))))).----.))))))((((.........))))... ( -14.90)
>bosTau2.chr29 546812 59 - 45822729
AUUUAACCAGUAUCUACUCUC--CUUCAGGGCUACCUUGAAGAUGACAACCCUGGA--------------GGAGC
..................(((--((((((((....(........)....)))))))--------------)))). ( -18.10)
>canFam2.chr21 44002892 67 + 54024781
AUUUAACCAGUGUCUGCUUUCGUCCUCAGUGCUAUUUUGAAGAUCAUCACUCUGGC--------UUUGGUGGAAC
.(((.(((((.(((.......(((.((((.......)))).))).........)))--------.))))).))). ( -10.89)
>dasNov1.scaffold_2894 16535 55 - 85457
---------AAUU-UUUUUCU--UUUCUAGGCUAUCUUGAAGAUCUUGUUUCAAGC--------UUCAGAGGAAU
---------....-......(--((((((((((....(((((......))))))))--------)).)))))).. (  -9.30)
>consensus
GGUUAAUCAAAAU_UUCUCUU__CUUCAGGGCAAACUUGAAGAUAAAUCUUCUGAC________UUUAGAGGAUC
.......................(((((((.....)))))))................................. ( -5.69 =  -5.92 +   0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Nov 24 16:48:49 2006