R/getSummaryFile.R
getSummaryFile.Rd
Retrieval function of the assembly_summary.txt file from NCBI.
getSummaryFile(db, kingdom, file = assemblies_info_path(db, kingdom))
database name. E.g. refseq
or genbank
.
kingdom for which assembly_summary.txt file shall be
retrieved. See also getKingdoms
.
path, local path to total summary file, default is in tmp folder.
if (FALSE) {
test <- getSummaryFile("refseq","plant")
test
}