A short list of available kingdoms of life
getKingdoms(db = "refseq")
a character string specifying the database from which the genome
shall be retrieved: db = "refseq"
, db = "genbank"
,
db = "ensembl"
, db = "ensemblgenomes"
.
Default is db = "refseq"
.
# retrieve kingdoms available from refseq
getKingdoms(db = "refseq")
#> [1] "archaea" "bacteria" "fungi"
#> [4] "invertebrate" "plant" "protozoa"
#> [7] "vertebrate_mammalian" "vertebrate_other" "viral"
# retrieve kingdoms available from genbank
getKingdoms(db = "genbank")
#> [1] "archaea" "bacteria" "fungi"
#> [4] "invertebrate" "plant" "protozoa"
#> [7] "vertebrate_mammalian" "vertebrate_other"